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AMC 153 (First Semester, 2007-2008)

This is the website for the class "Parallel and Distributed Computing".


Annoucements

  • First Day of Classes on Saturday, 16 Jun 2007, 9:00AM


Lecture Notes

Penguin Power: Linux and Commodity Parallel Computing [PDF]
Introduction to GNU Development Tools [PDF]
Building the AGILA HPCS [PDF]
Using the AGILA HPCS [PDF]
Parallel Programming with MPI: Basics [PDF]
Parallel Programming with MPI: Point to Point Communications [PDF]
Parallel Programming with MPI: Collective Communications [PDF]
Parallel Programming with MPI: Non-blocking Communications [PDF]
Parallel Programming with MPI: Persistent Communications [PDF]
Wilkinson's Book Slides [HTML]
C Programming Slide by Andrew Vizcarra [PDF] updated 11/10/2001
Short Sample Programs available now [DIR]


Resources

AGILA High Performance Computing System User's Manual [PDF] [HTML]
Putty SSH Client for Win32 [EXE]
PSCP SCP Client for Win32 [EXE]
PSFTP SCP Client for Win32 [EXE]
GUI-based SCP Client for Win32 [EXE]
MS Windows-based MPI Software [HTML]


Documentation for Programs Available in the AGILA HPCS

Message Passing Interface
LAM-MPI Primer [PDF]
MPI Quick Reference [PDF]
MPI Java Bindings [PDF]

Groups, Algorithms and Programming
GAP Reference Guide [PDF]
GAP Tutorial [PDF]
Parallel GAP Manual [PDF]

Parallel Extensible Toolkit for Scientific Computing
PETSc Manual [PDF]

Fifth Generation Mesoscale Model (MM5)
MM5 Tutorial [HTML]
MM5 Source Code Documentation [HTML]
MM5 Model Description Documentation [HTML]
Terrain Preprocessor Documentation [HTML]
DGRAW Documentation [HTML]

NWCHEM High Performance Computational Chemistry Software
NWCHEM Users' Guide [PDF]
NWCHEM Programmers' Guide Part I [PS]
NWCHEM Programmers' Guide Part II [PS]

NAMD Scalable Molecular Dynamics
NAMD Users' Guide [HTML]


Cluster Building References

Parallel Processing HOWTO [HTML] [PDF]
Beowulf HOWTO [HTML] [PDF]
Cluster HOWTO [HTML] [PDF]
 
Google
It's hip2b2
Mobile, Security, Web 2.0, Pipe Dreams and More
Barry, the Blackberry Sync Tool, Built for Fedora 9
iPhone 1.1.2 and 1.1.3 OTB Hack
Patch to Allow Breaking the First Name Field into Multiple Lines
Patch to Allow Removing of Dates in GenealogyJ’s Graphical Tree Report
Barry, the Blackberry Sync Tool, Built for Fedora 8
Upgrading to Fedora 8 on a Dell Latitude D510
Hoy Smokes! Why do Philippine Disgruntled Soldiers Like Hotels?
Some Quick Shots of Macau
AMC 153 SY 2006-2007 Pre-Final Grades
Wanted Researchers: Open to Ateneo CS, MIS and ECCE Students

Slashdot
News for nerds, stuff that matters
E=mc^2 Verified In Quantum Chromodynamic Calculation
Torvalds's Former Company Transmeta Acquired and Gone
Obama's Mobile Phone Records Compromised, Shared
AP Suspends DoD Over Altered US Army Photo
Silverlight On the Way To Linux
Hacks Allowing Disabled Gamers To Play <em>Guitar Hero</em>
Oblong's g-speak Brings "Minority Report" Interface To Life
Massive Martian Glaciers Found
How To Find a Mobile Games Publisher?
Resurrecting the Mighty Mammoth, Cheaply
Unix Dict/grep Solves Left-Side-of-Keyboard Puzzle
Kaminsky Bug Options Include "Do Nothing," Says IETF
Search For the Tomb of Copernicus Reaches an End
Apple DMCAs iPodHash Project
Network Neutrality &mdash; Without Regulation


Stuff
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For any Questions, Comments or Suggestions
please email me at wyu at ateneo dot edu

Academic and Course Website (Release 3.2)
© 2001-2005, William Emmanuel S. Yu