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AMC 153 (First Semester, 2007-2008)

This is the website for the class "Parallel and Distributed Computing".


Annoucements

  • First Day of Classes on Saturday, 16 Jun 2007, 9:00AM


Lecture Notes

Penguin Power: Linux and Commodity Parallel Computing [PDF]
Introduction to GNU Development Tools [PDF]
Building the AGILA HPCS [PDF]
Using the AGILA HPCS [PDF]
Parallel Programming with MPI: Basics [PDF]
Parallel Programming with MPI: Point to Point Communications [PDF]
Parallel Programming with MPI: Collective Communications [PDF]
Parallel Programming with MPI: Non-blocking Communications [PDF]
Parallel Programming with MPI: Persistent Communications [PDF]
Wilkinson's Book Slides [HTML]
C Programming Slide by Andrew Vizcarra [PDF] updated 11/10/2001
Short Sample Programs available now [DIR]


Resources

AGILA High Performance Computing System User's Manual [PDF] [HTML]
Putty SSH Client for Win32 [EXE]
PSCP SCP Client for Win32 [EXE]
PSFTP SCP Client for Win32 [EXE]
GUI-based SCP Client for Win32 [EXE]
MS Windows-based MPI Software [HTML]


Documentation for Programs Available in the AGILA HPCS

Message Passing Interface
LAM-MPI Primer [PDF]
MPI Quick Reference [PDF]
MPI Java Bindings [PDF]

Groups, Algorithms and Programming
GAP Reference Guide [PDF]
GAP Tutorial [PDF]
Parallel GAP Manual [PDF]

Parallel Extensible Toolkit for Scientific Computing
PETSc Manual [PDF]

Fifth Generation Mesoscale Model (MM5)
MM5 Tutorial [HTML]
MM5 Source Code Documentation [HTML]
MM5 Model Description Documentation [HTML]
Terrain Preprocessor Documentation [HTML]
DGRAW Documentation [HTML]

NWCHEM High Performance Computational Chemistry Software
NWCHEM Users' Guide [PDF]
NWCHEM Programmers' Guide Part I [PS]
NWCHEM Programmers' Guide Part II [PS]

NAMD Scalable Molecular Dynamics
NAMD Users' Guide [HTML]


Cluster Building References

Parallel Processing HOWTO [HTML] [PDF]
Beowulf HOWTO [HTML] [PDF]
Cluster HOWTO [HTML] [PDF]
 
Google
It's hip2b2
Mobile, Security, Web 2.0, Pipe Dreams and More
Pre-Final Grades for CS 262 SY 2008-2009
First flow-tools update in nearly three (3) years!
iPhone 3G Unlock is available … now!
Some Pictures during Some Trips
Barry, the Blackberry Sync Tool, Built for Fedora 9
iPhone 1.1.2 and 1.1.3 OTB Hack
Patch to Allow Breaking the First Name Field into Multiple Lines
Patch to Allow Removing of Dates in GenealogyJ’s Graphical Tree Report
Barry, the Blackberry Sync Tool, Built for Fedora 8
Upgrading to Fedora 8 on a Dell Latitude D510

Slashdot
News for nerds, stuff that matters
Amazon Wants Patent For Inserting Ads Into Books
Fake Tamiflu "Out-Spams Viagra On Web"
Source Code of Several Atari 7800 Games Released
How To Get Your Program Professionally Marketed?
Professor Gets 4 Years in Prison for Sharing Drone Plans With Students
Copyright Should Encourage Derivative Works
Open Source Facing a Difficult Battle For Cloud Relevance
Phoenix Lander Discovers Nighttime Snowfall On Mars
Seattle Data Center Outage Disrupts E-Commerce
Is the Kindle DX Worth the Money?
XHTML 2 Cancelled
Squeezing a Wikipedia Snapshot Onto an 8GB iPhone
Emulated PC Enables Linux Desktop In Your Browser
London Stock Exchange To Abandon Windows
iPhone Vulnerability Yields Root Access Via SMS


Stuff
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It's hip2b2
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For any Questions, Comments or Suggestions
please email me at wyu at ateneo dot edu

Academic and Course Website (Release 3.2)
© 2001-2005, William Emmanuel S. Yu